Alexey Antonov, Vladimir Pronkevich, Andrey Averin, 1.Dorogny Street 6 676740, Arkhara Town, Amursk Region (Amurskaya Oblast), Khingansky State Nature Reserve, Russia
2008
Measurement Data from Avian Influenza (AI) Sampling in the Amur River basin, Russian Far East, 2008
Digital Dataset
NA
NA
na
This data set contains the data and morphometric information for birds caught in mistnets and with other means for sampling Avian Influenza (AI) and for banding. These data were collected during April 2008 until October 2008 at 8 (eight) locations in the Khabaravosk and Amursk regions of Russian Far East, in collaboration with the University of Alaska-Fairbanks, USA. 450 AI samples were obtained from 66 species. Exact catching location details are given in the following: Lebedinoye Lake (48.9267, 130.5082), Schastya Bay (53.4700, 140.9136), Arhara town vicinity (49.4442, 130.0833), Kleshenskoye Lake (49.4007, 129.7265), Antonovskoye Lake (49.4459, 129.9756), Uril River (49.0918, 130.2870), Amur River (48.8890, 130.6230), Burea River Reservoir (50.3324, 130.5621) . It was assumed that some birds in that study area link with Alaska. This dataset focuses on passerines and shorebirds. Specific AI analysis of samples is coming forward, and will be published elsewhere. Here we present on traditional bird banding and opportunistic measurements of birds caught in the framework of the AI sampling campaign 2006, 2007 and 2008. This dataset links with 6 other sites in the Russian Far East in 2008, and is compatible to other bird banding studies along the flyway. It represents for the first time a coordinated multi-year study done during fall migration and with identical methods at these sites within the Sea of Okhotsk region, Russian Far East. Data from the other study sites are also available online. An analysis of these data is coming forward; for details please contact authors and project collaborators.
These data were collected in order to link the potential occurrence of Avian Influenza in the Russian Far East with morphometric measures for the same individuals. Data from this site are compatible with 6 other locations in 2006, 2007 and 2008 where the same data where collected following an identical protocol. This would allow to learn more about state of the birds, subspecies, migration tactics, flyways and Avian Influenza.
The sampling and banding sites are geo-referenced.
Unknown
Unknown
Current for 2006
None planned for this dataset 2008
Amur river basin, Khabarovsk Region, Russian Far East
141.2816
129.7265
53.3831
48.2949
None
Bird migration
Avian Influenza
Russian Far East
Khabarovsk region
Amursk region
Jewish Autonmous Republic
Khingan Nature Reserve
Mistnetting
Flyway study
National Park Service Theme Category Thesaurus
Bird migration
Avian Influenza
Russian Far East
Khabarovsk region
Amursk region
Jewish Autonmous Republic
Khingan Nature Reserve
Mistnetting
Flyway study
ISO 19115 Topic Category
Bird migration
Avian Influenza
Russian Far East
Khabarovsk region
Amursk region
Jewish Autonmous Republic
Khingan Nature Reserve
Mistnetting
Flyway study
None
Russia
Russian Far East
Khabarovsk region
Amur river
Amursk region
Khingan Nature Reserve
Burea Reservor
Amur river
Sea of Okhotsk
None
Enter a keyword
National Park System Unit Name Thesaurus
Enter a keyword
National Park System Unit Code Thesaurus
Enter a keyword
none (ITIS used for Metadata. The three species Aythia fuligula , Motacilla taivana and Turdus eunomus were not found in ITIS and are not shown in this taxonomic tree) )
single species
vertebrates
Gallinago gallinago
Turdus eunomus
Anas falcata
Luscinia svecica
Asio otus
Asio flammeus
Larus shistisagus
Corvus frugilegus
Coturnix japonica
Larus ridibundus
Tringa glareola
Actitis hypoleucos
Alcedo atthis
Luscinia calliope
Aix galericulata
Emberiza spodocephala
Gallinago stenura
Motacilla tschutschensis
Saxicola torquata
Calidris acuminata
Locustella certhiola
Calidris subminuta
Motacilla taivana
Sterna hirundo
Streptopelia orientalis
Tringa stagnatilis
Ardea cinerea
Phalacrocorax carbo
Anser albifrons
Tringa guttifer
Larus hyperboreus
Anas penelope
Anas platyrhynchos
Limosa limosa
Phalaropus lobatus
Tringa totanus
Calidris alba
Emberiza aureola
Emberiza rutila
Acrocephalus aedon
Emberiza pallasi
Muscicapa dauurica
Anas formosa
Phylloscopus borealis
Emberiza chrysophrys
Anas platyrhynchos
Motacilla cinerea
Anas crecca
Acrocephalus bistrigiceps
Lanius cristatus
Phylloscopus trochiloides
Ficedula parva
Anthus hodgsoni
Phylloscopus schwarzi
Luscinia cyane
Phylloscopus fuscatus
Motacilla alba ocularis
Scolopax rusticola
Tringa erythropus
Turdus naumanni
Tringa nebularia
Turdus pallidus
Anthus rubescens
Garrulus glandarius
Emberiza fucata
Calcarius lapponicus
Aythia fuligula
Mergus albellus
(ITIS was used for Metadata)
Unknown
Aleksey Antonov
Bird ID according to Alexey Antonov, using the books: 1. 1. Ryabycev V. K. 2002. Guide for birds of Ural and Western Siberia. Ekaterinburg. Ural State University edition. 2. Marchant J., Prater T., Haymann P. 1988. Shorebirds. An identification guide to the waders of the world. Houghton Mifflin Company, Boston. 3. Ivanov A. I., Schtegmann B. K. 1964. Brief identification guide for the birds of USSR. Moscow-Leningrad. ''Science'' edition. ; 4. Svensson L. 1975. Identification Guide to European Passerines. Stockholm. Naturhistoriska Riksmuseet edition. Subspecies are often not well described for this region, and thus no data on this issue are given. For digital data: We used ITIS USDA for taxonomic information. For mis-mathces, we used: Stepanyan L. S. 2003. Conspectus of the ornithological fauna of Russia and adjacent territoties. Moskow. 806 p.
Species were indentified by Alexey Antonov; some species esacped the nets etc. and were not further recorded. Not all birds in the region can be caught with mist nets, and the inventory could be incomplete in these regards. We used ITIS USDA for taxonomica information. But for Acrocephalus arundinaceus orientalis (Salicaria turdina orientalis Temmink et Schlegel, 1847) Cyanopica cyanus (Pallas, 1776) Larus heuglini Bree, 1876 Motacilla alba leucopsis (Motacilla leucopsis Gould, 1838) Motacilla taivana (Swinhoe, 1863) Muscicapa latirostris Raffles, 1822 Parus cyanus Pallas, 1770 Parus minor Temminck et Schlegel, 1848 Parus montanus Baldenstein, 1827 Parus palustris Linnaeus, 1758 Phragmaticola aeedon (Pallas, 1776) the most authoritive Russian source on taxonomy was used: Stepanyan L. S. 2003. Conspectus of the ornithological fauna of Russia and adjacent territoties. Moskow. 806 p.
no bird specimens, some feather and blood
Falk Huettmann
University of Alaska Fairbanks
419 IRVING 1
Fairbanks
Alaska
99775
USA
+1 907 474 7882
fffh@uaf.edu
Species were selected for a potential link with Avian Influenza, with Alaska and feasibility.
Kingdom
Animalia
Phylum
Chordata
Subphylum
Vertebrata
Class
Aves
Order
Anseriformes
Family
Anatidae
Subfamily
Anatinae
Genus
Aix
Species
Aix galericulata
Mandarin Duck
Genus
Anas
Species
Anas crecca
sarcelle d'hiver
Species
Anas falcata
Falcated Teal
Species
Anas formosa
Baikal Teal
Species
Anas penelope
canard siffleur
Species
Anas platyrhynchos
canard colvert
Genus
Mergellus
Species
Mergellus albellus
harle piette
Subfamily
Anserinae
Genus
Anser
Species
Anser albifrons
oie rieuse
Order
Ciconiiformes
Family
Ardeidae
Genus
Ardea
Species
Ardea cinerea
Grey Heron
Family
Laridae
Subfamily
Larinae
Genus
Larus
Species
Larus hyperboreus
goéland bourgmestre
Species
Larus ridibundus
mouette rieuse
Species
Larus schistisagus
Slaty-backed Gull
Subfamily
Sterninae
Genus
Sterna
Species
Sterna hirundo
sterne pierregarin
Family
Phalacrocoracidae
Genus
Phalacrocorax
Species
Phalacrocorax carbo
grand cormoran
Family
Scolopacidae
Genus
Actitis
Species
Actitis hypoleucos
Common Sandpiper
Genus
Calidris
Species
Calidris acuminata
Sharp-tailed Sandpiper
Species
Calidris alba
bécasseau sanderling
Species
Calidris subminuta
Long-toed Stint
Genus
Gallinago
Species
Gallinago gallinago
bécassine des marais
Species
Gallinago stenura
Pin-tailed Snipe
Genus
Limosa
Species
Limosa limosa
Black-tailed Godwit
Genus
Phalaropus
Species
Phalaropus lobatus
phalarope à bec étroit
Genus
Scolopax
Species
Scolopax rusticola
bécasse des bois
Genus
Tringa
Species
Tringa erythropus
Spotted Redshank
Species
Tringa glareola
Wood Sandpiper
Species
Tringa guttifer
Nordmann's Greenshank
Species
Tringa nebularia
Common Greenshank
Species
Tringa stagnatilis
Marsh Sandpiper
Species
Tringa totanus
Common Redshank
Order
Columbiformes
Family
Columbidae
Subfamily
Columbinae
Genus
Streptopelia
Species
Streptopelia orientalis
Oriental Turtle Dove
Order
Coraciiformes
Family
Alcedinidae
Subfamily
Alcedininae
Genus
Alcedo
Species
Alcedo atthis
Common Kingfisher
Order
Galliformes
Family
Phasianidae
Subfamily
Perdicinae
Genus
Coturnix
Species
Coturnix japonica
Japanese Quail
Order
Passeriformes
Family
Corvidae
Genus
Corvus
Species
Corvus frugilegus
Rook
Genus
Garrulus
Species
Garrulus glandarius
Eurasian Jay
Family
Emberizidae
Genus
Calcarius
Species
Calcarius lapponicus
bruant lapon
Genus
Emberiza
Species
Emberiza aureola
Yellow-breasted Bunting
Species
Emberiza chrysophrys
Yellow-browed Bunting
Species
Emberiza fucata
Chestnut-eared Bunting
Species
Emberiza pallasi
Pallas's Reed Bunting
Species
Emberiza rutila
Chestnut Bunting
Species
Emberiza spodocephala
Black-faced Bunting
Family
Laniidae
Genus
Lanius
Species
Lanius cristatus
Brown Shrike
Family
Motacillidae
Genus
Anthus
Species
Anthus hodgsoni
Olive-backed Pipit
Species
Anthus rubescens
pipit d'Amérique
Genus
Motacilla
Species
Motacilla alba
Subspecies
Motacilla alba ocularis
Species
Motacilla cinerea
Grey Wagtail
Species
Motacilla tschutschensis
Family
Muscicapidae
Genus
Ficedula
Species
Ficedula parva
Red-breasted Flycatcher
Genus
Luscinia
Species
Luscinia calliope
Siberian Rubythroat
Species
Luscinia cyane
Siberian Blue Robin
Species
Luscinia svecica
Bluethroat
Genus
Muscicapa
Species
Muscicapa dauurica
Asian Brown Flycatcher
Genus
Saxicola
Species
Saxicola torquatus
Family
Sylviidae
Genus
Acrocephalus
Species
Acrocephalus aedon
Thick-billed Warbler
Species
Acrocephalus bistrigiceps
Black-browed Reed Warbler
Genus
Locustella
Species
Locustella certhiola
Pallas's Grasshopper Warbler
Genus
Phylloscopus
Species
Phylloscopus borealis
Arctic Warbler
Species
Phylloscopus fuscatus
Dusky Warbler
Species
Phylloscopus schwarzi
Radde's Warbler
Species
Phylloscopus trochiloides
Greenish Warbler
Family
Turdidae
Genus
Turdus
Species
Turdus naumanni
Naumann's Thrush
Species
Turdus pallidus
Pale Thrush
Order
Strigiformes
Family
Strigidae
Subfamily
Asioninae
Genus
Asio
Species
Asio flammeus
hibou des marais
Species
Asio otus
hibou moyen-duc
The authors and INBRE/UAF remain the owners of this dataset. However, this data can be distributed or utilized by interested parties.
The authors and INBRE/UAF remain the owners of this dataset. This data can be distributed or utilized by interested parties. However, it is important to interprete the data and findings in the context of the overall study and the methods outlined. Please refer to “Citation” for directions on how to cite when using the data.
Alexey Antonov and Falk Huettmann
Khingansky State Nature Reserve
Dorogny St. 6
Arhara Town
Amursk Region
676740
Russia
antonov@hingan.amur.ru; fffh@uaf.edu
This study was primarily funded by INBRE/UAF
Excel, PC IBM
NA
Unknown
NA
NA
NA
Consistent methods were used; see protocol
Consistent methods were used; see protocol
Dataset is complete for the 2008 AI field campaign
GPS accuracy
0.00
GPS accuracy
Field & GIS
None
UAF
Field: The following sites were surveyed by the team members: Lebedinoye Lake (48.9267, 130.5082), Schastya Bay (53.4700, 140.9136), Arhara town vicinity (49.4442, 130.0833), Kleshenskoye Lake (49.4007, 129.7265), Antonovskoye Lake (49.4459, 129.9756), Uril River (49.0918, 130.2870), Amur River (48.8890, 130.6230), Burea River Reservoir (50.3324, 130.5621) . AI was sampled from the following species: Common Snipe Gallinago gallinago Dusky Thrush Turdus eunomus Falcated Teal Anas falcate Bluethroat Luscinia svecica Long-eared Owl Asio otus Short-eared Owl Asio flammeus Slaty-backed Gull Larus shistisagus Rook Corvus frugilegus Japanese Quail Coturnix japonica Common Gull Larus ridibundus Wood Sandpiper Tringa glareola Common Sandpiper Actitis hypoleucos Common Kingfisher Alcedo atthis Siberian Rubythroat Luscinia calliope Mandarin Duck Aix galericulata Black-faced Bunting Emberiza spodocephala Pintail Snipe Gallinago stenura Eastern Yellow Wagtail Motacilla tschutschensis Common Stonechat Saxicola torquata Sharp-tailed Sandpiper Calidris acuminate Pallas' Grasshopper Warbler Locustella certhiola Long-toed Stint Calidris subminuta Wagtail Motacilla taivana Common Tern Sterna hirundo Oriental Turtle Dove Streptopelia orientalis Marsh Sandpiper Tringa stagnatilis Grey Heron Ardea cinerea Great Cormorant&Grey Heron Phalacrocorax carbo + Ardea cinerea White-fronted Goose Anser albifrons Nordmann's Greenshank Tringa guttifer Glaucous Gull Larus hyperboreus Wigeon&Mallard Anas penelope + A. platyrhynchos Black-tailed Godwit Limosa limosa Red-necked Phalarope Phalaropus lobatus Redshank Tringa tetanus Sanderling Calidris alba Yellow-breasted Bunting Emberiza aureola Chestnut Bunting Emberiza rutila Thick-billed Reed Warbler Acrocephalus aedon Pallas' Reed Bunting Emberiza pallasi Asian Brown Flycatcher Muscicapa dauurica Baikal Teal Anas Formosa Arctic Warbler Phylloscopus borealis Yellow-browed Bunting Emberiza chrysophrys Mallard Anas platyrhynchos Grey Wagtail Motacilla cinerea Common Teal Anas crecca Black-browed Reed Warbler Acrocephalus bistrigiceps Brown Shrike Lanius cristatus Greenish Warbler Phylloscopus trochiloides Red-throated Flycatcher Ficedula parva Olive-backed Pipit Anthus hodgsoni Radde's Warbler Phylloscopus schwarzi Dusky Warbler Phylloscopus fuscatus White Wagtail Motacilla alba ocularis Woodcock Scolopax rusticola Spotted Redshank Tringa erythropus Greenshank Tringa nebularia Pale Thrush Turdus pallidus Buff-bellied Pipit Anthus rubescens Jay Garrulus glandarius Grey-headed Bunting Emberiza fucata Lapland Longspur Calcarius lapponicus Tufted Duck Aythia fuligula Smew Mergus albellus Bird banding: We used a protocol that is viryually identical with the 'revised African-European Songbird Migration Network' banding scheme. Lab: Data were cleaned and worked up in EXCEL. The detailed protocol is the following: Bird Banding Protocol, Summer/Fall Season 2006 (version 2: Fairbanks 10th July 2006) Bird Bands are provided by the local contractors for each of the birds caught and swaped for this project (>1500; this includes passerines, shorebirds, gulls and waterfowl). Bird Band Numbers are used as a reference for linking AI swap samples stored in tubes. If bird is not banded, use a unique and well documented code for birds, e.g. date+species+number. Bird Data to be collected: Full Name of Collector (full name, no abbreviations) Location of Sample Collection (local name, English and Russian) Coordinates of Sample (latitude and longitude; use GPS if possible) Net Number where sample was caught/collected (if possible, provide map/sketch of net setup) Date of Sample Collection (day day, month month, year year year year) Time of Sample Collection (local time 00.00 - 24.00h) Species Name 1 (English name; subspecies if possible) Species Name 2 (Scientific name only if appropriate) Bird Band Number (if collected; assumes Russian banding scheme. Mark if from dropping or dead bird) Wing length (in millimeters, flattened and unflattened for international compatibility and science reasons) Head to Beak (maximum in millimeters; not used for passerines) (Tarsus and Beak Length is not measured; can be done voluntarily by the bander. Document method used) Age (follow EURING standards; see Manual enclosed) Sex (where possible; document method used to determine) Primaries (BTO Moult Score Card; see Manual enclosed) Body Moult (Beginning, Middle, End judged by expert knowledge =majority of feathers) Body Fat (Kaiser Scale; see reference enclosed) Weight (in grams; to the nearest 0.1 g for birds weighing <200 g) Feather Samples (5 each: Growing Feathers, Body, Secondary, Tail Central: plug not cut. For Primaries, please use one from outer 10th) Blood samples (usually not taken, unless for specific species and numbers and when Falk Huettmann is around; consult with Falk Huettmann for details) Photo taken ? (usually not taken, unless for specific species of interest (e.g. document outliers) or when Falk Huettmann is around; consult with Falk Huettmann for details; document the film role and/or digital camera) Comments: Anything relevant to understand, analyze and interprete the sample and data DIGITAL DATA: Please make sure that the Banding Data as well as the AI Sampling Data are keyed in, and provided, as an EXCEL sheet according to the data scheme above (see Excel template enclosed). Metadata will be created as well (see Word template enclosed).
Bairlein et al.
1995
revised African-European Songbird Migration Network scheme
revised
Kaiser Fat Score
Falk Huettmann
2006
Bird Banding Protocol, Summer/Fall Season 2006
GPS
INBRE/UAF
Falk Huettmann, INBRE
2006
AI Sampling Campaign 2006
20062207
20061009
Fully explained in Methodology; see protocol
Unknown
same as authors
GPS, map
Point
0.001
0.001
Decimal degrees
World Geodetic System of 1984
World Geodetic System of 1984
6378137
298.25722210088
AntonovAIfield_2008_DrwCr08_FHVers2
This data set is a flat XML file, derived from a standard Excel file provided to the field team
University of Alaska
Collector
Full name of the data collector
University of Alaska
Collection Location
Verbal description of name where catching takes place. For number code see below: Kamchatka 1) Avacha vally, near Elizovo 2) Starichkov Island, Pasific Ocean 3) Khlamovitskoe Boloto (Bog) Sakhalin 1) East cost of Aniva Bay, 5 km to south from Korsakov, SI 2) Cottages (Dachi), Dal'nee, Yu.Sakhalinsk, SI
University of Alaska
Lat GPS Coordinate
Latitude 4 decimals GPS reading
University of Alaska
Long GPS Coordinate
Longitude 4 decimals GPS reading
University of Alaska
Net Number
Number of the mist net where animal was caught
University of Alaska
Collection Year
Year when animal was caught, four digits, e.g. 2008
LANL and University of Alaska
Collection Time
Local time 0-24 hours
University of Alaska and LANL
Species Common Name
English name; subspecies if possible. Follow ITIS is possible
University of Alaska.
Species Name Scientific
Scientific name only if appropriate, use ITIS
University of Alaska
Bird Band Number
If collected; assumes Russian banding scheme. Marked if from dropping or dead bird
University of Alaska
Wing length flat
in millimeters
University of Alaska
Wing length unflattened
in millimeters
University of Alaska
Head to Beak
Max in millimeters
University of Alaska
(Tarsus)
Voluntary, measure of tarsus length
University of Alaska
(Beak Length)
Voluntary, measure of beak length
University of Alaska
Age Group
Standards of African-European Songbird Migration Network
University of Alaska
Sex
Gender of bird when possible to determine
University of Alaska
Primaries Moult
Taken from BTO Moult Score Card
University of Alaska
Body Moult
Beginning, Middle, End
University of Alaska
Body Fat
Kaiser Scale
University of Alaska
Weight
Body weight in grams
University of Alaska
Feather Sample ID
taken yes/no; label number (only done for few selected species)
University of Alaska
Blood Sample ID
taken yes/no; label number (only done for few selected species)
University of Alaska
Photo taken
taken yes/no; label number (only done for few selected species)
University of Alaska
Notes
Notes and comments regarding data collected for this speciemn/sample
University of Alaska
AI
Code of Avian Influenza Sample
Mikhail Markovets
Submitter Name
Name of person submitting the data
LANL
Submitter Organisation
Organisation who submitted data
LANL
Submitter Phone
Phone of person who submitted data
LANL
Submitter Email
Email of data submitting person
LANL
Batch ID
Identification of Batch submitted
LANL
Collector Organization
Collector Organization
LANL
Collector Phone
Phone of Data ollector
LANL
Collector Fax
Collector Fax
LANL
Collection Country
Country where data were collected
LANL
Location Habitat Info
Habitat description where sampling took place
LANL
Collection Month
Month of colelction, 2 digits, e.g. 12
LANL and UAF
Collection Day
Day of data collection, 2 digits
LANL UAF
Capture Status
Status of Caught Animal
LANL
Bird Behaviour
Behaviour of bird while sampled
LANL
Domestic Bird Characterization
Domestic Bird Characterization
LANL
Cloacal Sample Id
Cloacal Sample Id
LANL
Cloacal Sample Active
Cloacal Sample Active
LANL
Cloacal Sample Transport Media
Cloacal Sample Transport Media
LANL
Tracheal Sample Id
Tracheal Sample Id
LANL
Tracheal Sample Transport Media
Tracheal Sample Transport Media
LANL
Banding Protocol
Protocol name for bird banding
UAF
Band Agency
Bird Banding Agency that delivered the bands and receives retrap information
UAF and LANL
Trapping Status
Trapping Status of bird and sample collected
LANL and UAF
Primaries Moult Schema
Moult Schema of Primaries
UAF LANL
Body Moult Schema
Schema used to describe Body Moult
LANL and UAF
Intensity
Intensity of Moult according to protocol
UAF and LANL
Bird Condition
Condition of Bird
UAF and LANL
Alexey Antonov
Falk Huettmann Uni. of Alaska-Fairbanks
mailing
Dorgny Street 6
Arkhara
Amurskaya Oblast (Region)
676741
Russia
NA
The authors shall not be held liable for improper or incorrect use of the data described and/or contained herein. These data and related graphics (i.e. GIF or JPG format files) are not legal documents and are not intended to be used as such. The information contained in these data is dynamic and may change over time. The data are not better than the original sources from which they were derived. It is the responsibility of the data user to use the data appropriately and consistent within the limitations of geospatial data in general and these data in particular. The related graphics are intended to aid the data user in acquiring relevant data; it is not appropriate to use the related graphics as data. The authors give no warranty, expressed or implied, as to the accuracy, reliability, or completeness of these data. It is strongly recommended that these data are directly acquired from an project server and not indirectly through other sources which may have changed the data in some way. Although these data have been processed successfully on computer systems at the University, no warranty expressed or implied is made regarding the utility of the data on other systems for general or scientific purposes, nor shall the act of distribution constitute any such warranty. This disclaimer applies both to individual use of the data and aggregate use with other data.
EXCEL IBM PC
false
None
Contact authors and explain request via letter, email or phone
basic computing
20070124
Falk Huettmann, Alexey Antonov
INBRE, University of Alaska, Fairbanks
419 Irving 1, EWHALE lab, Inst. of Arctic Biology, Biology & Wildlife Dept., University of Alaska-Fairbanks 99775 USA
1 907 4747882
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
FGDC-STD-001.1-1999
na
na
na
Unclassified
na