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    Adaptive strategies and energetic profiles of bacteria in permafrost and temperate environments: a comparative study

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    Author
    Woody, Hannah
    Chair
    Muscarella, Mario
    Committee
    Wolf, Diana
    Barbato, Robyn
    Keyword
    Bacterial genetics
    Bacterial genomes
    Bacteria
    Evolution
    Permafrost
    Microbiology
    Metadata
    Show full item record
    URI
    http://hdl.handle.net/11122/15549
    Abstract
    Exploring microbial life in extreme conditions has not only challenged our definition of habitability but is expanding our understanding of where extraterrestrial life may occur. Permafrost, which covers approximately 27% of Earth’s surface, offers a unique window into microbial resilience in an extreme sub-zero environment, which is considered analogous to environments found on icy planets like Mars. Despite such harsh conditions, permafrost sustains diverse and active microbial communities. However, the energy dynamics and genomic adaptations that enable their survival remain largely unexplored. Here, we compare the maintenance energy requirements and genomic traits of permafrost-derived bacteria with bacteria from temperate environments to gain a better understanding of how these microbes survive in permafrost. We find that permafrost bacteria maintain stable maintenance energy levels as temperatures decrease, suggesting the presence of energy-use efficiency adaptations. Further genomic analysis of permafrost bacteria identified distinct gene adaptations related to stress response and resource acquisition, highlighting increased gene copies in pathways such as transporters and folding proteins. These results not only challenge previous assumptions about microbial energy dynamics but also provide insights into the complex mechanisms enabling microbial life to thrive under some of the most extreme conditions on Earth.
    Description
    Thesis (M.S.) University of Alaska Fairbanks, 2024
    Table of Contents
    Chapter 1: General introduction -- 1.1 Mechanisms of microbial survival in cold environments -- 1.2 Mechanisms of microbial survival in nutrient-limited environments -- 1.3 Microbial response to nutrient limitation in cold environments -- 1.4 Conclusion -- 1.5 Literature cited. Chapter 2: A comparative study of maintenance energy in permafrost bacteria and their temperate relatives -- 2.1 Abstract -- 2.2 Introduction -- 2.3 Methods -- 2.3.1 Isolation, cultivation, and identification of bacteria -- 2.3.2 Quantifying maintenance energy -- 2.3.2.1 Experimental design -- 2.3.2.2 Oxygen consumption rates -- 2.3.2.3 Growth rates -- 2.3.2.4 Statistical analysis -- 2.4 Results -- 2.4.1 Bacterial isolates and phylogenetic comparison -- 2.4.2 Oxygen consumption -- 2.4.3 Growth rates -- 2.4.4 Maintenance energy -- 2.5 Discussion -- 2.6 Literature cited. Chapter 3: Comparative genomics between permafrost and temperate bacteria -- 3.1 Abstract -- 3.2 Introduction -- 3.3 Methods -- 3.3.1 Experimental design -- 3.3.2 Phylogeny -- 3.3.3 Genome similarity/differences -- 3.3.4 Metabolic pathway comparison -- 3.4 Results -- 3.4.1 Phylogeny -- 3.4.2 Genome similarities and differences -- 3.4.3 Pathway comparison and gene copy numbers -- 3.5 Discussion. Chapter 4: General conclusions -- 4.1 Literature cited -- Appendix A: Supplemental material.
    Date
    2024-08
    Type
    Thesis
    Collections
    Biological Sciences

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