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    Sea-ice bloom dynamics, putative parasitoids, and crude-oil impacts to microbiota modified by irradiance

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    Author
    Dilliplaine, Kyle
    Chair
    Hennon, Gwenn
    Committee
    Aguilar-Islas, Ana
    Kelley, Amanda
    Mahoney, Andy
    Muscarella, Mario
    Keyword
    Microorganisms
    Oil spills
    Effect of oil spills on
    Effect of light on
    Light
    Utqiagvik
    Algal blooms
    Sea ice
    Microbiology
    Metadata
    Show full item record
    URI
    http://hdl.handle.net/11122/15963
    Abstract
    Arctic sea ice serves as a critical habitat for microbial communities, supporting, in part, the Arctic food web and influencing global biogeochemical cycles. However, climate change is rapidly altering this environment leading to a shorter ice-covered period and increased light transmittance. Greater accessibility due to less ice coverage is increasing industrial and commercial activities which raises the risk of crude oil spills that threaten sea-ice microbial communities. This dissertation explores the seasonal dynamics of prokaryotes and unicellular eukaryotes during the spring algal bloom, and the impacts of potential light stress in combination with crude oil exposure on Arctic sea-ice diatoms and microbial communities with time-series data and laboratory-based experiments. Chapter 2 examines microbial community succession during the 2021 vernal ice-algal bloom near Utqiagvik, Alaska. The bloom reached was larger than previously observed in this region. An unprecedented bloom of the oil-degrading bacterium Oleispira suggested potential environmental hydrocarbon contamination. Metabarcoding and co­ occurrence analyses revealed that diatoms, particularly Nitzschia spp., were primary hosts for parasitoid taxa such as chytrids Cryothecomonas and, highlighting the potential for top-down control of algal populations and the maintenance of diversity. Chapters 3 & 4 investigate the interactive effects of crude oil exposure and irradiance on Arctic sea-ice diatoms. These experimental results show species-specific responses to oil, with Fragilariopsis cylindrus being highly sensitive, while Synedropsis hyperborea exhibited stimulated growth at low oil concentrations. (Meta)transcriptomic analyses in Chapter 4 revealed that oil exposure induced a switch of metabolism in diatoms from autotrophic to catabolic, particularly in pathways related to lipid degradation. The findings suggest that oil spills may favor flagellates over diatoms, shifting microbial community composition with potential consequences to biogeochemical cycles. Together, these studies provide novel insights into the importance of internal lipid reserves, alternative metabolic pathways, and microbial interactions in supporting microalgal resilience within the Arctic sympagic ecosystem.
    Description
    Dissertation (Ph.D.) University of Alaska Fairbanks, 2025
    Table of Contents
    Chapter 1: General introduction. Chapter 2: Sea-ice microbial community succession and the potential role of parasitoids in the maintenance of diversity -- 2.1 Abstract -- 2.2 Introduction -- 2.3 Methods -- 2.3.1 Study site and overview -- 2.3.2 Sea ice sampling -- 2.3.3 Physical chemical and biological measures -- 2.3.4 Irradiance measurements and estimations -- 2.3.5 DNA extraction, sequencing, and bioinformatic processing -- 2.3.6 Bioinformatic analysis -- 2.4 Results -- 2.4.1 Physical and chemical properties -- 2.4.2 Irradiance measurements and estimations -- 2.4.3 Biological properties -- 2.4.3.1 Chlorophyll a and phaeophytin -- 2.4.3.2 Community structure and composition -- 2.4.3.3 Parasitoid-host interactions -- 2.5 Discussion -- 2.5.1 Physiochemical environment -- 2.5.2 Sea-ice algal bloom -- 2.5.3 Prokaryotic community dynamics -- 2.5.4 Eukaryotic community dynamics -- 2.5.5 Parasitoids -- 2.5.6 Parasitoid-host relationships -- 2.6 Conclusions -- 2.6 References -- Appendix A: Supplemental material. Chapter 3: Impacts of crude oil on Arctic sea-ice diatoms modified by irradiance -- 3.1 Abstract -- 3.2 Introduction -- 3.3 Methods -- 3.3.1 Isolation and identification of sea-ice algal strains -- 3.3.2 Crude oil WAF preparation and chemical analyses -- 3.3.3 Experiment setup -- 3.3.4 Crude oil WAF preparation and chemical analyses -- 3.3.5 Data analysis -- 3.3.6 Modeling the impact of oil exposure and snow cover on sea-ice algal growth and diversity -- 3.4 Results -- 3.4.1 Characterization of sea-ice diatom isolates -- 3.4.2 Sublethal impacts of crude oil modified by irradiance -- 3.5 Discussion -- 3.5.1 Growth-irradiance curves recapitulate sea-ice diatom niche -- 3.5.2 Chemical composition of WAF from Alaska North Slope crude oil -- 3.5.3 Dose response of sea-ice diatoms to ANS crude oil -- 3.5.4 Model -- 3.6 Conclusion -- 3.7 References -- Appendix B: Supplemental material. Chapter 4: (Meta)transcriptomics reveals a shift from core metabolism to catabolic pathways in sea-ice diatoms after crude oil exposure, while flagellates exhibit greater resilience -- 4.1 Abstract -- 4.2 Introduction -- 4.3 Methods -- 4.3.1 Experiments -- 4.3.1.1 Fragilariopsis cylindrus isolate -- 4.3.1.2 Whole community field sampling and material collection -- 4.3.2 Crude oil water-accommodated fraction (WAF) preparation and chemical analyses -- 4.3.3 Microalgal physiology -- 4.3.4 Nucleic acid extraction, sequencing, and bioinformatic processing -- 4.3.5 RNA bioinformatic processing -- 4.3.6 Analysis and visualization -- 4.4 Results -- 4.4.1 Physiology -- 4.4.2 Community composition -- 4.4.3 Gene expression -- 4.5.1 Light -- 4.5.2 Oil -- 4.5.2.1 Stress response -- 4.5.2.2 Sea-ice protist sensitivity to crude oil -- 4.6 Conclusions -- 4.7 References -- Appendix C: Supplemental material. Chapter 5: General conclusions -- 5.1 Overview -- 5.2 Future work -- 5.3 Synthesis -- 5.4 References.
    Date
    2025-05
    Type
    Dissertation
    Collections
    Marine Biology
    Oceanography

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