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    An investigation of Ichthyophonus infection related in-river mortality in Yukon River Chinook salmon from multiple knowledge systems: Indigenous, local, and western science

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    Author
    Herron, Keith D.
    Chair
    Westley, Peter
    Black, Jessica
    Committee
    Clinton, Morag
    Carothers, Courtney
    Keyword
    Chinook salmon
    Parasites
    Ichthyosporidium hoferi
    Yukon River
    Ichthyophonus
    Metadata
    Show full item record
    URI
    http://hdl.handle.net/11122/16248
    Abstract
    The recent historic low salmon returns in the Yukon River contribute to an ongoing humanitarian crisis for subsistence users and Indigenous Peoples with cultural and well-being ties to salmon. After over a decade of relative calm, the marine parasite Ichthyophonus has undergone a resurgence and is once again infecting Yukon River Chinook salmon (Oncorhynchus tshawytscha; king; Taryaqvak; Ggaal; Gath; Łuk choo, hereafter referred to as king salmon) at high rates, with currently unknown consequences for survival of migrating adults. This thesis pairs multiple knowledge systems to assess the prevalence, severity, and impact of Ichthyophonus on adult Yukon River king salmon during their upriver spawning migration. Organized as two chapters, I conducted work that suggests highly infected king salmon may experience mortality before reaching spawning grounds due to Ichthyophonus and its interactions with other stressors. Infection severity significantly declined as fish migrated upriver, consistent with selective mortality of severely diseased fish. However, infection prevalence remained largely unchanged during migration, which we attribute to detection limits of testing coupled with infection progression. Through dialogues at community gatherings facilitated in two fishing-dependent Yukon River communities, I sought to co-interpret research findings alongside the Tribal Council and community members. Participants highlighted Ichthyophonus as only one of a myriad of co-occurring challenges faced by Yukon River king salmon and consistently voiced concerns that a focus on disease would be used to assign blame for salmon declines that they felt were more attributable to factors such as marine bycatch, and overfishing. Overall, the approach and findings contribute to an elevation of, and stronger inclusion of, Indigenous Knowledge, Tribal governance, local knowledge, and ecological stewardship within western fisheries science and management. While this thesis provides evidence that Ichthyophonus may indeed contribute to king salmon mortality in-river, it should not be used to diminish the voices of community dialogue participants who emphasized the importance of considering the impacts of industrial fisheries, broader environmental factors, as well as historical and cross- jurisdictional management practices when explaining the low salmon abundance and population declines. I dream this thesis will contribute to mending a proverbial collective fishing net to steward fisheries by uplifting Tribal sovereignty and governance, intentionally weaving together many ways of knowing to guide us toward more equitable, respectful, and restorative salmon management for future generations.
    Description
    Thesis (M.S.) University of Alaska Fairbanks, 2025
    Table of Contents
    Chapter 1: General introduction -- 1.1 Positionality statement -- 1.2 Institutional permits and consultations -- 1.3 Project background -- 1.4 Authorship and funding -- 1.5 References -- 1.6 Figures -- 1.7 Appendix 1. IACUC approval letter -- 1.8 Appendix 2: 2022 ADF&G aquatic resource permit -- 1.9 Appendix 3: 2023 ADF&G aquatic resource permit. Chapter 2: Associations between ichthyophoniasis disease progression and en route mortality of upstream migrating adult Chinook salmon (Oncorhynchus tshawytscha; king; Taryaqvak; Ggaal; Gath; Łuk choo) in the Yukon River, Alaska -- 2.1 Abstract -- 2.2 Introduction -- 2.3 Methods -- 2.3.1 Study area -- 2.3.2 Fish sampling -- 2.3.3 Samples collected and measurements -- 2.4 Laboratory analyses -- 2.4.1 Histopathoogy -- 2.4.2 Genetic stock groupings -- 2.5 Statistical analyses -- 2.5.1 Covariate selection -- 2.5.2 Model selection -- 2.5.3 Prevalence model formulation -- 2.5.4 Severity model formulation -- 2.5.5 Hypothesis testing -- 2.6 Results -- 2.7 Hypothesis testing -- 2.8 Discussion -- 2.8.1 Ichthyophonus infection prevalence -- 2.8.2 Ichthyophonus infection severity -- 2.8.3 Caveats -- 2.8.4 Management implications -- 2.8.5 Beyond the fish -- 2.9 References -- 2.10 Figures and tables. Chapter 3: Heartbeat of the Yukon: combining indigenous, local, and western knowledge systems to monitor the impacts of Ichthyophonus on Yukon River Chinook salmon (Oncorhynchus tshawytscha; king; Taryaqvak; Ggaal; Gath; Łuk choo) -- 3.1 Abstract -- 3.2 Introduction -- 3.2 Indigenous research frameworks -- 3.3 Objectives -- 3.4 Methods -- 3.4.1 Co-interpreting the impact of Ichthyophonus on king salmon with Indigenous Knowledge holders -- 3.4.2 Local and western knowledge -- 3.4.2.1 Study area -- 3.4.2.2 Field data collection -- 3.4.2.3 Samples collected -- 3.5 Laboratory diagnostics -- 3.5.1 Visual detection (field-based assessment) -- 3.5.2 Histopathology (laboratory diagnostic) -- 3.5.3 Quantitative polymerase chain reaction (laboratory assessment) -- 3.6 Statistical analyses -- 3.7 Results and discussion -- 3.7.1 Co-interpreting the impact of Ichthyophonus on king salmon -- 3.7.2 Visual Ichthyophonus detection (field-based assessment) -- 3.8 Concluding thoughts -- 3.9 References -- 3.10 Figures and tables. Chapter 4: General conclusion -- 4.1 References.
    Date
    2025-08
    Type
    Thesis
    Collections
    Fisheries

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