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dc.contributor.authorJossart, Jonah
dc.date.accessioned2025-11-05T21:53:39Z
dc.date.available2025-11-05T21:53:39Z
dc.date.issued2025-08
dc.identifier.urihttp://hdl.handle.net/11122/16252
dc.descriptionThesis (M.S.) University of Alaska Fairbanks, 2025en_US
dc.description.abstractThe benthic environment in southern Kachemak Bay, Alaska provides critical ecosystem services, processing organic matter from the land and the sea, and returning nutrients to the food web. In Kachemak Bay, concerns have arisen that marine agriculture (mariculture) operations in the form of salmon hatcheries and oyster farms may have negative impacts on the local environment. This thesis investigates the seafloor sediment environment to assess these potential impacts under salmon hatchery net pens in Tutka Bay Lagoon, and under an oyster farm in Jakolof Bay. We found that beneath the net pens, high waste inputs of fish food, feces and dead fish contribute to negative impacts on the local environment. Very few sediment organisms were found, and most are likely excluded from that habitat by lack of oxygen that arises due to inputs of excess organic matter. Furthermore, the hatchery site showed high oxygen and carbon fluxes associated with microbial and physical processes, because macrofaunal organisms were not present. Time series data show how the lagoon frequently experiences conditions that are outside of the regionally expected values and indicate that waste inputs from hatchery operations, together with the isolated nature of the lagoon, contribute to low oxygen conditions persisting in the deeper portion of the lagoon. Overall, the Tutka Bay Lagoon salmon hatchery has an adverse impact on the local environment. However, oyster farms sites did not show any negative impacts on this specific environment, being similar in terms of their community and ecosystem to non­ mariculture sites, which are good measures of ecosystem status.en_US
dc.description.sponsorshipKachemak Bay National Estuarine Research Reserve, Alaska EPSCoRen_US
dc.description.tableofcontentsChapter 1: General introduction -- 1.1 Introduction -- 1.2 References. Chapter 2: Benthic community composition and mariculture effects in southern Kachemak Bay -- 2.1 Abstract -- 2.2 Introduction -- 2.3 Methods -- 2.3.1 Study site and sample collection -- 2.3.2 Sediment characteristics -- 2.3.3 Sediment microbial biomass -- 2.3.4 Macrofauna abundance and biomass estimate -- 2.3.5 Data analysis -- 2.4 Results -- 2.4.1 Sediment environmental characteristics -- 2.4.2 Microbial versus macrofaunal biomass -- 2.4.3 Macrofaunal community composition -- 2.4.4 Relationship among environmental variables and benthic community composition -- 2.5 Discussion -- 2.5.1 Environmental factors and benthic community composition -- 2.5.2 Impacts of mariculture activities: oyster farm and fish hatchery net pens -- 2.6 Conclusions -- 2.7 References. Chapter 3: Benthic metabolism and nutrient cycling in the shallow coastal ecosystem of Kachemak Bay, Alaska -- 3.1 Abstract -- 3.2 Introduction -- 3.3 Methods -- 3.3.1 Sample collection and analysis -- 3.3.2 Data processing and analysis -- 3.4 Results -- 3.4.1 Benthic metabolism: oxygen and dissolved inorganic carbon -- 3.4.2 Nutrients -- 3.4.2 Tutka Bay Lagoon water column time series -- 3.5 Discussion -- 3.5.1 Role of benthic metabolism in oxygen utilization and nutrient cycling -- 3.5.2 Water chemistry dynamics in an anthropogenically managed lagoon -- 3.5 Conclusions -- 3.6 References. Chapter 4: General conclusions -- 4.1 Conclusions -- 4.2 References.en_US
dc.language.isoen_USen_US
dc.subjectEcological assessmenten_US
dc.subjectOyster fisheriesen_US
dc.subjectSalmon fisheriesen_US
dc.subject.otherMaster of Science in Marine Biologyen_US
dc.titleBenthic community composition and ecosystem function in southern Kachemak Bay, Alaskaen_US
dc.typeThesisen_US
dc.type.degreemsen_US
dc.identifier.departmentDepartment of Marine Biologyen_US
dc.contributor.chairMincks, Sarah
dc.contributor.chairKelley, Amanda
dc.contributor.committeeAguilar-Islas, Ana
refterms.dateFOA2025-11-05T21:53:40Z


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