Browsing Master's Projects by Author "Baños Cervantes, Hector Daniel"
Testing multispecies coalescent simulators with summary statisticsBaños Cervantes, Hector Daniel; Allman, Elizabeth; Rhodes, John; Goddard, Scott; McIntyre, Julie; Barry, Ron (2018-12)The Multispecies coalescent model (MSC) is increasingly used in phylogenetics to describe the formation of gene trees (depicting the direct ancestral relationships of sampled lineages) within species trees (depicting the branching of species from their common ancestor). A number of MSC simulators have been implemented, and these are often used to test inference methods built on the model. However, it is not clear from the literature that these simulators are always adequately tested. In this project, we formulated tools for testing these simulators and use them to show that of four well-known coalescent simulators, Mesquite, Hybrid-Lambda, SimPhy, and Phybase, only SimPhy performs correctly according to these tests.